PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65805.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HB-PHD

Protein Properties

Length: 622aa MW: 71012.4 Da PI: 8.6835

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.6	1.3e-10	405	445	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 L ++F +n ps++ +e L+++lg++ ++V WF+N R+ PKA65805.1 405 VKLRQVFSENELPSRTVKENLSQQLGISAERVDKWFKNARY 445 5799************************************7 PP
2	PHD	32.1	2.6e-11	165	218	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpegewlCeeCkek 51 +C+ C++ + +++++lCdg C+ fH+kCl+++le+ + ++ wlC+ C++k PKA65805.1 165 FCAKCKSreAFPDNDIILCDGhCNCGFHQKCLNPPLEKIPPGDQGWLCKICDCK 218 699**55455****55***********8888888*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MERARKKTNV VNGKTKETLQ KGSSDSLDKC RDSFKITRKR NYCIGNNSKN EAKDVEKRSI 60 QRRVKMRKTV EHDEVSRLQR RARYLLVKMK LEQNLIDAYS GDGWKGHSRE KLKPEKELQR 120 AERQILKCKL GIRDAIRQLD VLGSEGRIED SVMHPDGSVF HEHIFCAKCK SREAFPDNDI 180 ILCDGHCNCG FHQKCLNPPL EKIPPGDQGW LCKICDCKMV LLDTINAHLG TCFTVNSLWE 240 DIFKEAIAAP DIDWASHSPT KDWPSDDSDD EDYYPGVISD RGEFDDYGDG CSSSDFICSS 300 GASLNSMCLN SCESSDHEIT AYRRQRKDVD YLKLYDEMFG KESIEGDEQS EDEDWGPYKR 360 KHARSEIGIA SRDCGGKDSH AKRALQEKIS CDRRSFFRIP PGATVKLRQV FSENELPSRT 420 VKENLSQQLG ISAERVDKWF KNARYASLKI RKANASNQSL IGSEKSKKRR QISERTSKLD 480 RSCLLPLASI FHLPRHMKRT GQRVNLTLFE LTLKKRTEEA LATVHSPEIQ VKSLSKNDAR 540 RRRHGNGSDR NAPSEKYDAA PAHEQLCLDE MQRLWILENR LHQLKNVLLA RKVDDEASSV 600 KPHSGGVIFV PVVELKEKPG NF

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MERARKKTNV VNGKTKETLQ KGSSDSLDKC RDSFKITRKR NYCIGNNSKN EAKDVEKRSI  60
QRRVKMRKTV EHDEVSRLQR RARYLLVKMK LEQNLIDAYS GDGWKGHSRE KLKPEKELQR  120
AERQILKCKL GIRDAIRQLD VLGSEGRIED SVMHPDGSVF HEHIFCAKCK SREAFPDNDI  180
ILCDGHCNCG FHQKCLNPPL EKIPPGDQGW LCKICDCKMV LLDTINAHLG TCFTVNSLWE  240
DIFKEAIAAP DIDWASHSPT KDWPSDDSDD EDYYPGVISD RGEFDDYGDG CSSSDFICSS  300
GASLNSMCLN SCESSDHEIT AYRRQRKDVD YLKLYDEMFG KESIEGDEQS EDEDWGPYKR  360
KHARSEIGIA SRDCGGKDSH AKRALQEKIS CDRRSFFRIP PGATVKLRQV FSENELPSRT  420
VKENLSQQLG ISAERVDKWF KNARYASLKI RKANASNQSL IGSEKSKKRR QISERTSKLD  480
RSCLLPLASI FHLPRHMKRT GQRVNLTLFE LTLKKRTEEA LATVHSPEIQ VKSLSKNDAR  540
RRRHGNGSDR NAPSEKYDAA PAHEQLCLDE MQRLWILENR LHQLKNVLLA RKVDDEASSV  600
KPHSGGVIFV PVVELKEKPG NF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	68	QRRVKMRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-122	HB-PHD family protein