PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65828.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 433aa MW: 47673.1 Da PI: 7.5495

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.5	2.2e-39	182	258	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dl +ak+yhr+h+vC++hsk+++v+v+gle rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q PKA65828.1 182 CQVEGCNTDLISAKDYHRKHRVCDIHSKSAKVIVAGLECRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQL 258 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MACGGTVKAM ARISGSGMDT RGKRMEWNLK TPLQWDWERF TFFSGNESEV CDWRAENGGM 60 MKSGPVCSSV SGTGTCSGSD LGNGSSRSSF SSSVGSSPKN GVEVSGFSCE AVDGFHEKLN 120 KSNELICGED TGNGSGEPPV DLKLGKRTYF EDYGGVDMKA LSSSISIKKP KASYQATQSS 180 YCQVEGCNTD LISAKDYHRK HRVCDIHSKS AKVIVAGLEC RFCQQCSRFH DLSEFDQKKR 240 SCRRRLSDHN ARRRKPQLET ISFNSRFLPS FYGSLWEESP GFSLSTVKGS WFKANKAKGV 300 DAQVELPILN FSNTIHDTHH DLGRPMSSKN TTNEAIKQVL QSSSTSAFKY RAPDLGCALS 360 LLSNESCCPS NIGESNMIQF TSSNQTALSN PLFSMVNSST GCWHDEDFGA QEPFTFNSYE 420 NPFFDANFLE FKT

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MACGGTVKAM ARISGSGMDT RGKRMEWNLK TPLQWDWERF TFFSGNESEV CDWRAENGGM  60
MKSGPVCSSV SGTGTCSGSD LGNGSSRSSF SSSVGSSPKN GVEVSGFSCE AVDGFHEKLN  120
KSNELICGED TGNGSGEPPV DLKLGKRTYF EDYGGVDMKA LSSSISIKKP KASYQATQSS  180
YCQVEGCNTD LISAKDYHRK HRVCDIHSKS AKVIVAGLEC RFCQQCSRFH DLSEFDQKKR  240
SCRRRLSDHN ARRRKPQLET ISFNSRFLPS FYGSLWEESP GFSLSTVKGS WFKANKAKGV  300
DAQVELPILN FSNTIHDTHH DLGRPMSSKN TTNEAIKQVL QSSSTSAFKY RAPDLGCALS  360
LLSNESCCPS NIGESNMIQF TSSNQTALSN PLFSMVNSST GCWHDEDFGA QEPFTFNSYE  420
NPFFDANFLE FKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-49	SBP family protein