PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65906.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 616aa MW: 67546 Da PI: 7.052

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	185	232	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l PKA65906.1 185 KGPWTSAEDAILLDYVKKFGEGNWNAVKKRSGLSRCGKSCRLRWANHL 232 79******************************************9986 PP
2	Myb_DNA-binding	52.5	1.2e-16	238	281	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+++++ +++++G++ W++Ia ++ gRt++++k++w++ PKA65906.1 238 KGAFTKEEEQRIILLHAKMGNK-WAKIATLLP-GRTDNEIKNYWNT 281 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MRGRAAIGSA GLAWPSFLSI FVHARDCATF GVRAAAVPPE GTERGANCEA WRGEERWLSA 60 YLSLSLISQA TSHGVSLFPL ASRIGIRTPE AFPVSELRFL SPISSNAGHG LNFAGKSIPC 120 SVSGVFICCG AGSGGWMDSR EGYSIMNRLQ NEDDNTMLPR DPNESSFGDG SYDGSSLTGG 180 VAFKKGPWTS AEDAILLDYV KKFGEGNWNA VKKRSGLSRC GKSCRLRWAN HLRPNLKKGA 240 FTKEEEQRII LLHAKMGNKW AKIATLLPGR TDNEIKNYWN TRIKRRQRAG LPLYPPNFYR 300 QEVNENLQSH SAGQYNIGDK VSQCLQGVMH HMSDHGFNPL EANLLPLSYT PDLSFTGMLS 360 QDLKLLSHSF DRGENRARQF KESQTIFPVS DDDIASGFRM FLQLPNEPSE KFHGNFELGY 420 PCHAPDPDSN WKAESFGCSY PGSHCLSKNV NYSASRPLPG TLKTELPSLQ YPDLGSNSWQ 480 TCLPAPCIEA VDAYIQSPAT VFVQSDCDLR SSGLLETLVH ETHGMSFGNK QPSGKSLFPA 540 AVNPGIPEIS TVNFYSADWE ENGDSNSPFF LSAVSLFNEC NPSRSYLAEH TSSVANLGEL 600 RALLSLLLLG APFPAF

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MRGRAAIGSA GLAWPSFLSI FVHARDCATF GVRAAAVPPE GTERGANCEA WRGEERWLSA  60
YLSLSLISQA TSHGVSLFPL ASRIGIRTPE AFPVSELRFL SPISSNAGHG LNFAGKSIPC  120
SVSGVFICCG AGSGGWMDSR EGYSIMNRLQ NEDDNTMLPR DPNESSFGDG SYDGSSLTGG  180
VAFKKGPWTS AEDAILLDYV KKFGEGNWNA VKKRSGLSRC GKSCRLRWAN HLRPNLKKGA  240
FTKEEEQRII LLHAKMGNKW AKIATLLPGR TDNEIKNYWN TRIKRRQRAG LPLYPPNFYR  300
QEVNENLQSH SAGQYNIGDK VSQCLQGVMH HMSDHGFNPL EANLLPLSYT PDLSFTGMLS  360
QDLKLLSHSF DRGENRARQF KESQTIFPVS DDDIASGFRM FLQLPNEPSE KFHGNFELGY  420
PCHAPDPDSN WKAESFGCSY PGSHCLSKNV NYSASRPLPG TLKTELPSLQ YPDLGSNSWQ  480
TCLPAPCIEA VDAYIQSPAT VFVQSDCDLR SSGLLETLVH ETHGMSFGNK QPSGKSLFPA  540
AVNPGIPEIS TVNFYSADWE ENGDSNSPFF LSAVSLFNEC NPSRSYLAEH TSSVANLGEL  600
RALLSLLLLG APFPAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	3e-76	MYB family protein