PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66018.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LSD

Protein Properties

Length: 171aa MW: 18120.3 Da PI: 8.7734

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.8	4.1e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YPrGA +V+Ca+C+tV PKA66018.1 7 CSGCRTLLLYPRGAINVCCAICNTV 31 ************************9 PP
2	zf-LSD1	47.2	3.6e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC++lL+YPrGA+ VRC++C+t+ PKA66018.1 46 CGGCQILLMYPRGASTVRCSCCNTI 70 ***********************97 PP
3	zf-LSD1	47.9	2.2e-15	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V PKA66018.1 84 CGQCRTTLMYPYGAPSVKCAVCHYV 108 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MQSQLMCSGC RTLLLYPRGA INVCCAICNT VTPVTPAVTE MAQIVCGGCQ ILLMYPRGAS 60 TVRCSCCNTI NVARAANQVA QVSCGQCRTT LMYPYGAPSV KCAVCHYVTN IGMSNIRPPT 120 PMPPTTTPPL PNSSTSMRSK NVTVVVENPM SVNENGKLVS NVVVGVTTNK K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	9e-55	LSD family protein