PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA66277.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27437.3 Da    PI: 9.3838
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA66277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.1e-31958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskRrngi+KKA+ELSvLCdaeva+iifs +gkl+e+ 
  PKA66277.1  9 KRIENKINRQVTFSKRRNGIMKKAYELSVLCDAEVALIIFSCRGKLFEFG 58
                79**********************************************95 PP
2K-box92.57.2e-3181171999
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +++++ +++qel+kLk+++e+Lqr+qRhllGedL++LslkeLqqLe+qLe sl++ R+k++ l+l+q+ee q ke+ l ++nk+L++kle
  PKA66277.1  81 PNDHETLNWYQELSKLKAKYESLQRSQRHLLGEDLDELSLKELQQLERQLELSLTQARQKRTLLMLDQMEEIQIKERHLGDINKQLKHKLE 171
                 5678899*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGIMK KAYELSVLCD AEVALIIFSC RGKLFEFGSP  60
DITKTLERYK RCTFTPQAID PNDHETLNWY QELSKLKAKY ESLQRSQRHL LGEDLDELSL  120
KELQQLERQL ELSLTQARQK RTLLMLDQME EIQIKERHLG DINKQLKHKL EIEGGSMRAI  180
QGSSWLQLDN EALSSCSRAR DPGPTLEIGR YHHYAPTGRE AAAGPRNGAS GNFMPGWAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-68MIKC_MADS family protein