PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66418.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 248aa MW: 26870.7 Da PI: 8.8254

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PKA66418.1 107 YECKTCSKRFPTFQALGGHRASH 129 99**********99999998887 PP
2	zf-C2H2	14.1	0.00014	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PKA66418.1 163 HECSICGAEFSSGQALGGHMRRH 185 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MVAIRQSKSR NPTFAFLLAS ISPSLSRIPL HILMALAQEE LEPMASYSST IKGKRSRRAA 60 RAAPSSSSSS SAEDYSVVTD EEEDMAHCLI LLAQGRAFKA SNGSFLYECK TCSKRFPTFQ 120 ALGGHRASHK KALPPPPETR HSALPPPPET RHEVAVFTRT KVHECSICGA EFSSGQALGG 180 HMRRHRPAVL AEEPEQKKMK TPVMPLDLNL PAPSDDADGN GDSFITSSVK PLIFSPATLA 240 AALVDCRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-39	C2H2 family protein