PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66548.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 397aa MW: 46341.9 Da PI: 8.9871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++H+++H PKA66548.1 21 YYCEYCGICRSKKSLIMSHMQSH 43 89********************6 PP
2	zf-C2H2	17	1.6e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+ F+ +s+L +H ++H PKA66548.1 69 YACEECDAIFKKPSYLLQHKQSH 91 89******************999 PP
3	zf-C2H2	18.5	5.7e-06	97	121	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH+ tH PKA66548.1 97 FTCPfeDCHSSYRRKDHLNRHLLTH 121 89*********************99 PP
4	zf-C2H2	11.6	0.00084	126	151	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp +C++ Fs n +H ++ H PKA66548.1 126 FYCPseNCNQKFSYEGNVIKHVKNfH 151 78********************9988 PP
5	zf-C2H2	17.5	1.1e-05	192	216	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ +s L++H +H PKA66548.1 192 HVCQepGCGKAFKYPSRLRKHEDSH 216 689999***************9888 PP
6	zf-C2H2	12.1	0.00062	226	249	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C ksF++ + Lk H ++ H PKA66548.1 226 CGepGCLKSFTNAEFLKAHVQScH 249 77779***************9955 PP
7	zf-C2H2	16	3.4e-05	282	306	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ Cg +Fs+ksn ++H + H PKA66548.1 282 KCSfdGCGHTFSNKSNVNKHVKAiH 306 79999***************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MVATSEGDDK LRPIFRDIRR YYCEYCGICR SKKSLIMSHM QSHHQVELKE AAVNGVHAQK 60 QELRQKLCYA CEECDAIFKK PSYLLQHKQS HSVERLFTCP FEDCHSSYRR KDHLNRHLLT 120 HQGRVFYCPS ENCNQKFSYE GNVIKHVKNF HNDNASCEGE KKHLCQVPRC GNAFKHASQL 180 WNHKDSHGER LHVCQEPGCG KAFKYPSRLR KHEDSHVKLE CLEIICGEPG CLKSFTNAEF 240 LKAHVQSCHK YFKCEVCGSQ QLRKNFKRHQ IAHQGILTER LKCSFDGCGH TFSNKSNVNK 300 HVKAIHKELK PFSCHMSGCR LKFTYKHVRD KHERTHIYEQ GDFLEVDSQR PRQKGGRKRQ 360 GIDIEMLTRK RIVPLDQSSI LDNGTDYLRW LLSGDDQ

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MVATSEGDDK LRPIFRDIRR YYCEYCGICR SKKSLIMSHM QSHHQVELKE AAVNGVHAQK  60
QELRQKLCYA CEECDAIFKK PSYLLQHKQS HSVERLFTCP FEDCHSSYRR KDHLNRHLLT  120
HQGRVFYCPS ENCNQKFSYE GNVIKHVKNF HNDNASCEGE KKHLCQVPRC GNAFKHASQL  180
WNHKDSHGER LHVCQEPGCG KAFKYPSRLR KHEDSHVKLE CLEIICGEPG CLKSFTNAEF  240
LKAHVQSCHK YFKCEVCGSQ QLRKNFKRHQ IAHQGILTER LKCSFDGCGH TFSNKSNVNK  300
HVKAIHKELK PFSCHMSGCR LKFTYKHVRD KHERTHIYEQ GDFLEVDSQR PRQKGGRKRQ  360
GIDIEMLTRK RIVPLDQSSI LDNGTDYLRW LLSGDDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-114	C2H2 family protein