PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66579.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 211aa MW: 23861.4 Da PI: 5.6407

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.7e-18	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ ar+ g++Rt+k+c++rw++yl PKA66579.1 23 KGPWTMEEDLILINYIANHGEGVWNNLARCAGLKRTGKSCRLRWLNYL 70 79********************************************97 PP
2	Myb_DNA-binding	53.3	6.5e-17	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+v++++++G++ W++Iar ++ gRt++++k++w++ PKA66579.1 76 RGNITPEEQMLIVELHARWGNR-WSKIARQLP-GRTDNEIKNFWRT 119 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTDDGGNGDK KTTESGQETE VRKGPWTMEE DLILINYIAN HGEGVWNNLA RCAGLKRTGK 60 SCRLRWLNYL RPDVRRGNIT PEEQMLIVEL HARWGNRWSK IARQLPGRTD NEIKNFWRTR 120 IQKKVKPGEL ADCSSQMMTI DEASTSHTSS VEENLAQGIS YDPLHPASNA SDHHPSNYAD 180 PAFTAGESGE NFWSVEDFWS IQALNGSDRD Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-78	MYB family protein