PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66596.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 198aa MW: 22762.8 Da PI: 6.6309

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.5	4.7e-15	1	31	21	51
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA EL vLCdaev++i+fsstgk+ ey+s PKA66596.1 1 MKKARELTVLCDAEVSLIMFSSTGKFSEYCS 31 8****************************96 PP
2	K-box	91.1	2e-30	43	141	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq+ s +l++a++e++q+ l+ Lk+ +++L++e+Rh++GedL+ L++keL+ Leq+++++lk +R++K++++++q+++ +kk k+ +e++k L ++le PKA66596.1 43 YQQVSAINLWSAQYEKMQNTLKHLKDINDELRKEIRHRMGEDLDGLDIKELRGLEQNMDEALKIVRNRKYHVITTQTDTFKKKLKNSEETHKGLLRELE 141 78889999**************************************************************************************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MKKARELTVL CDAEVSLIMF SSTGKFSEYC SPSADTKSMF DRYQQVSAIN LWSAQYEKMQ 60 NTLKHLKDIN DELRKEIRHR MGEDLDGLDI KELRGLEQNM DEALKIVRNR KYHVITTQTD 120 TFKKKLKNSE ETHKGLLREL EMNEEQAMFG YVEDDPSSSY EGALALANGG PHIYAFRVQP 180 SQPNLHGMGC RSHDLRLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	7e-50	MIKC_MADS family protein