PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66616.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 269aa MW: 29644 Da PI: 5.4501

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.1e-18	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PKA66616.1 88 KKRRLNMEQVRTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 141 456899***********************************************9 PP
2	HD-ZIP_I/II	129	2e-41	87	179	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdyeaLkr++d +k++n++L++ +++L++el++ PKA66616.1 87 EKKRRLNMEQVRTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEALKREFDIVKSQNDALHSRNKKLQSELMA 179 69***************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MYHNQTSCNG LPSSSSSTPP FFPQSFIFHS ALDEGHQLAP ILPTAPCADA QDFGAAVAML 60 GKRSVWSEEM AGGGEEELSD DCSQPGEKKR RLNMEQVRTL ERNFELGNKL EPERKMQLAR 120 ALGLQPRQIA IWFQNRRARW KTKQLEKDYE ALKREFDIVK SQNDALHSRN KKLQSELMAL 180 QGKEGAETIN LNKETEGSSS NRSENSSEIN LGISRSAAID GTLSPNQTRQ LFAAAGGGGG 240 GGGGNEENFC NIFCGAVEEP SAFWPWPEH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-71	HD-ZIP family protein