PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66724.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 214aa MW: 23854.9 Da PI: 6.5079

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108	7.4e-34	34	131	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+C+ lrrkC+++Cvlap+f +++p++fa+v++++G+snv k+l++l++++re+a++slvyeA++ +rdPv+G++g + + +++l++l+ el++ + PKA66724.1 34 PCAGCQKLRRKCKPECVLAPHFTSRSPETFACVQEVYGVSNVEKMLRRLHPSQREEAVDSLVYEARMILRDPVHGCLGQVAARHRELRRLADELSRSR 131 7********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
METSTSNSHA DQQSSPRLPP EARVIRRRTV HGSPCAGCQK LRRKCKPECV LAPHFTSRSP 60 ETFACVQEVY GVSNVEKMLR RLHPSQREEA VDSLVYEARM ILRDPVHGCL GQVAARHREL 120 RRLADELSRS RAILSVYQTL AASLEAGDPV PGISVDMESD HDDRRQQQPA ALPQQTETMS 180 KAPAEEVGGI NGEYDAPVGE EELQQHVDLL RMLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	6e-37	LBD family protein