PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA66784.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24512.3 Da    PI: 9.9109
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA66784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtfskRrngi+KKA E+SvLCda+v+++ifss gk+ ey+s
  PKA66784.1  9 KRIENSTNRQVTFSKRRNGIMKKAREISVLCDAQVSLVIFSSLGKMSEYCS 59
                79***********************************************96 PP
2K-box80.44.3e-2771161195
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                 yq++sgk+l++ak+e+l+ e++++kke++n+q e+Rhl+Ged++sL+ keL  +e++L+++l ++R+k++++l+     l+kke +l+eenk+L+
  PKA66784.1  71 YQQNSGKKLWDAKHENLSAEIDRIKKENDNMQIELRHLKGEDVNSLNPKELIPIEEALQNGLASVREKQMDFLK----MLKKKEMMLEEENKRLT 161
                 899*******************************************************************9986....59***********9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGRGKIEIKR IENSTNRQVT FSKRRNGIMK KAREISVLCD AQVSLVIFSS LGKMSEYCSP  60
STTLSKMLER YQQNSGKKLW DAKHENLSAE IDRIKKENDN MQIELRHLKG EDVNSLNPKE  120
LIPIEEALQN GLASVREKQM DFLKMLKKKE MMLEEENKRL TYLLHHQQLA MEGSMRDLDI  180
SYHQKDREFA SQMPMTFRLQ PIQPNLQGNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-80MIKC_MADS family protein