PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66829.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 512aa MW: 56545.6 Da PI: 5.0393

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	276	318	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er RR+++N ++ +Lr l+P+ + K++ a+iL A++Y+ +L PKA66829.1 276 HAERSRRKKLNGRLYTLRALVPNiS------KMDRASILGDAIDYVMEL 318 68*******************66......************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MGCCCGGRGE GMKNGEPCRD VMFLHQRSKA CEELSQFPSS IPLDSSLAYL PSFRNHAEVL 60 VSNQPTWNII NSSSHETDGE KTRVLVPMHG VFLVELFSWK HMEEERSTIE FVMSQCNPPS 120 YESMSLVSGA GDYHDVDGCG YSHPNLHQPE PTADDFPPWV PPPPPPAVDP QNLPWDSSSD 180 QFRLYSSSLN LFDGSIADSL VVSGKPTVEN DVSDLTAYQQ SLMSGGESSA MTREAAGGSA 240 MDSGAIECSD HGEEEDYQRT TTGRGVKRGA PSKNLHAERS RRKKLNGRLY TLRALVPNIS 300 KMDRASILGD AIDYVMELLK QIKDLQDELE ENGHPPDHEA DDEAAKQNGS NNVSNCQTEV 360 SRPPPLASRK TEHNNLSGEH SGGGDDKGPQ MEPHVEVKAV EGNEFFLKVF CEQRPGGFVR 420 LMEAMSSLGL EVTNANVTTS TNLVLNVFRV EKRDNEGVQA EQVRDSLLEV TRDVRAEWPQ 480 MVSAGESFAG DHFHHHHHHH RSLRHELHLS AN

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MGCCCGGRGE GMKNGEPCRD VMFLHQRSKA CEELSQFPSS IPLDSSLAYL PSFRNHAEVL  60
VSNQPTWNII NSSSHETDGE KTRVLVPMHG VFLVELFSWK HMEEERSTIE FVMSQCNPPS  120
YESMSLVSGA GDYHDVDGCG YSHPNLHQPE PTADDFPPWV PPPPPPAVDP QNLPWDSSSD  180
QFRLYSSSLN LFDGSIADSL VVSGKPTVEN DVSDLTAYQQ SLMSGGESSA MTREAAGGSA  240
MDSGAIECSD HGEEEDYQRT TTGRGVKRGA PSKNLHAERS RRKKLNGRLY TLRALVPNIS  300
KMDRASILGD AIDYVMELLK QIKDLQDELE ENGHPPDHEA DDEAAKQNGS NNVSNCQTEV  360
SRPPPLASRK TEHNNLSGEH SGGGDDKGPQ MEPHVEVKAV EGNEFFLKVF CEQRPGGFVR  420
LMEAMSSLGL EVTNANVTTS TNLVLNVFRV EKRDNEGVQA EQVRDSLLEV TRDVRAEWPQ  480
MVSAGESFAG DHFHHHHHHH RSLRHELHLS AN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-84	bHLH family protein