PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66891.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 173aa MW: 19248.1 Da PI: 6.665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.3e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C++dC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+ slvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++++ PKA66891.1 6 PCASCKLLRRRCTADCIFAPFFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRSDAVGSLVYEANARMRDPVYGCVGAISYLQNQVSHLQMQLAVAQA 104 7**********************************************************************************************9998 PP DUF260 100 e 100 e PKA66891.1 105 E 105 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MGGNSPCASC KLLRRRCTAD CIFAPFFPSD DPQKFAIVHK VFGASNVSKM LQELPVHQRS 60 DAVGSLVYEA NARMRDPVYG CVGAISYLQN QVSHLQMQLA VAQAEILCIQ MQQEQPIIPH 120 DHHLLHQHEH QLDPAAASLD EDSLLHPIPQ LMNFASSSNI VGKEPLKRES LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-72	LBD family protein