PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66920.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 350aa MW: 37388.3 Da PI: 9.7282

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.1e-06	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PKA66920.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	14.1	0.00014	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC Cgk++ +s++k H +t+ PKA66920.1 147 WKCDRCGKRYAVNSDYKAHSKTC 169 58*****************9998 PP
3	zf-C2H2	13.2	0.00027	177	195	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsrk+++++H + PKA66920.1 177 DCGTVFSRKDSFVTHRAFC 195 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MSGEAFRIPS ILPFHHDRHP NPCFHHQPAV APQPPANQAK KKRNLPGTPD PEAEVIALSP 60 KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR PPGGAPARKR VYVCPEASCV 120 HHDPARALGD LTGIKKHFSR KHGEKKWKCD RCGKRYAVNS DYKAHSKTCG TREYRCDCGT 180 VFSRKDSFVT HRAFCDALTQ ETAAAAAGGG SIGDEGSYAS DEAPAAVPTA KSDLSLWLNR 240 PEVAAPPPAP AAYLSATALL QKAAQMGATT SGGSSSSFFS GLLRSMKGPG YLPSSGGFSA 300 GEMAVTGMTR DFLGLGGEGG GQSLPELTRF APLGSGVEFV SSSSFNGTAR

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MSGEAFRIPS ILPFHHDRHP NPCFHHQPAV APQPPANQAK KKRNLPGTPD PEAEVIALSP  60
KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR PPGGAPARKR VYVCPEASCV  120
HHDPARALGD LTGIKKHFSR KHGEKKWKCD RCGKRYAVNS DYKAHSKTCG TREYRCDCGT  180
VFSRKDSFVT HRAFCDALTQ ETAAAAAGGG SIGDEGSYAS DEAPAAVPTA KSDLSLWLNR  240
PEVAAPPPAP AAYLSATALL QKAAQMGATT SGGSSSSFFS GLLRSMKGPG YLPSSGGFSA  300
GEMAVTGMTR DFLGLGGEGG GQSLPELTRF APLGSGVEFV SSSSFNGTAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein