PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA67133.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 235aa MW: 25170.8 Da PI: 8.8135

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA67133.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.3	1.9e-41	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q++ l+aela++++ PKA67133.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPETQRADAANSLVYEANVRLRDPVYGCMGAITALQRQVQALEAELAAVRA 143 7**********************************************************************************************9987 PP DUF260 100 e 100 PKA67133.1 144 D 144 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MSIARERCHE EIGKKVKREL ADPPEPMARR TLLSSVGASP NTVTPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHKV FGASNVSKML LEVPETQRAD AANSLVYEAN VRLRDPVYGC 120 MGAITALQRQ VQALEAELAA VRADILKHKF RQAGQAAALP AASAVHAVLL ASSGQVSLAA 180 APPQPPVHGD HHPLLPHPQV AGRATVLSPA TMYHPAPASS TDYSSITNEN VAYFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-71	LBD family protein