PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH01060.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

Nin-like

Protein Properties

Length: 630aa MW: 62379.9 Da PI: 8.3937

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH01060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56	7.6e-18	545	594	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +is++ +++ F+lp+ +AA+ Lg +++ +Kr+CR +G++RWP+Rk+ sl PNH01060.1 545 GQISIDAIRSVFELPVDEAARALGASVSEVKRRCRAHGVARWPQRKLLSL 594 5899******************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MDSREAGPSS LPAEASAMSA SAGARPLQQP QQQFSQFLQQ PHHLLEQQLG LYESRRRPNF 60 GSSQTTSWSP RATSVLQTAA AATLVHSAAP PPDDNLWWRR ACQDPLLQLP QPRGGAGGAA 120 WLAPPQALGP AEEAHGDQHQ LLAEIAAAPW PPYQPAGRTS SAYPSSTITL TAAEAATALL 180 TGAAPASRHL LAPPPAWAPP AMSWAGGCRA SGSPASSMST ASFGAGGLGA GGSYGAVGGG 240 YGARGSHGAG SLSAAAAEGC WVSGGSGGGG GGGWWGGVTR VTPVDLSVEF LLPTGPLAAE 300 GAATMAAPQR RSAGAYAAAA AAAPAATAAA DGDLTAAAAA AWVLRGASAG ARTSSGGVPP 360 SPFRCPARRK RPQPLREQRR PLLPPPPTTM ALSAPAALAA GGSTSAQRGS RPSALACGVG 420 PGNAAGADVR SPKLGADGST ATSAGLVPYT CDSGDGGGGD GGLYDYVNGR FHSIGGDTYG 480 SRGDTFDSGG GGGAFGRTDS FTSARAGGAL SDGDAGGGRD GGVAGGSGGC TSGDGGGAVA 540 SAADGQISID AIRSVFELPV DEAARALGAS VSEVKRRCRA HGVARWPQRK LLSLRRVAEV 600 ALADRGIPEE ERQADVYVFG RWAGGSRHTG

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MDSREAGPSS LPAEASAMSA SAGARPLQQP QQQFSQFLQQ PHHLLEQQLG LYESRRRPNF  60
GSSQTTSWSP RATSVLQTAA AATLVHSAAP PPDDNLWWRR ACQDPLLQLP QPRGGAGGAA  120
WLAPPQALGP AEEAHGDQHQ LLAEIAAAPW PPYQPAGRTS SAYPSSTITL TAAEAATALL  180
TGAAPASRHL LAPPPAWAPP AMSWAGGCRA SGSPASSMST ASFGAGGLGA GGSYGAVGGG  240
YGARGSHGAG SLSAAAAEGC WVSGGSGGGG GGGWWGGVTR VTPVDLSVEF LLPTGPLAAE  300
GAATMAAPQR RSAGAYAAAA AAAPAATAAA DGDLTAAAAA AWVLRGASAG ARTSSGGVPP  360
SPFRCPARRK RPQPLREQRR PLLPPPPTTM ALSAPAALAA GGSTSAQRGS RPSALACGVG  420
PGNAAGADVR SPKLGADGST ATSAGLVPYT CDSGDGGGGD GGLYDYVNGR FHSIGGDTYG  480
SRGDTFDSGG GGGAFGRTDS FTSARAGGAL SDGDAGGGRD GGVAGGSGGC TSGDGGGAVA  540
SAADGQISID AIRSVFELPV DEAARALGAS VSEVKRRCRA HGVARWPQRK LLSLRRVAEV  600
ALADRGIPEE ERQADVYVFG RWAGGSRHTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-09	Nin-like family protein