PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH01403.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family MYB
Protein Properties Length: 100aa    MW: 11119.6 Da    PI: 6.511
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH01403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-191661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd +l  +v   G+++W+tIa++++ gR++k+c++rw++ 
       PNH01403.1 16 KGPWTPEEDSILRSLVMAQGPRNWTTIASCIP-GRSGKSCRLRWLNQ 61
                     79******************************.***********996 PP
2Myb_DNA-binding30.48.8e-1069100235
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      g++++eEd  ++ a+ q+G++ W++Ia++++ gR
       PNH01403.1  69 GPFSAEEDAVILWAHMQYGNK-WASIAKHLP-GR 100
                      89*******************.*********.98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    
MELEDARDLG DDDVTKGPWT PEEDSILRSL VMAQGPRNWT TIASCIPGRS GKSCRLRWLN  60
QLSPAVKSGP FSAEEDAVIL WAHMQYGNKW ASIAKHLPGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-39MYB family protein