PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH02410.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C2H2

Protein Properties

Length: 362aa MW: 40265.4 Da PI: 8.1949

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH02410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	8	32	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C Cg +F + +L++H rtH PNH02410.1 8 YACDheGCGATFALSGDLTTHKRTH 32 789999******************9 PP
2	zf-C2H2	16	3.4e-05	38	62	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C+ sF+++ +Lk+H rtH PNH02410.1 38 YACDhpGCKASFTQSGHLKNHKRTH 62 789999******************9 PP
3	zf-C2H2	16.9	1.8e-05	68	92	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C Cg +F + nL++H rtH PNH02410.1 68 YTCDheGCGATFALSGNLTNHKRTH 92 99**********************9 PP
4	zf-C2H2	11.5	0.00091	98	122	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C Cg +F + L++H r H PNH02410.1 98 YACDheGCGATFAMRGALTTHERAH 122 789999*****************98 PP
5	zf-C2H2	17.9	8.3e-06	128	152	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C Cg F +snLk+H rtH PNH02410.1 128 YACDyeGCGAAFAMRSNLKNHKRTH 152 789999******************9 PP
6	zf-C2H2	15.3	5.6e-05	158	183	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C Cg F+++ +L+ H r+ H PNH02410.1 158 YACDneGCGAAFTQSNHLTIHKRSwH 183 789999*****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MHTGEKPYAC DHEGCGATFA LSGDLTTHKR THTGDKPYAC DHPGCKASFT QSGHLKNHKR 60 THTGEKPYTC DHEGCGATFA LSGNLTNHKR THTGEKPYAC DHEGCGATFA MRGALTTHER 120 AHTGEKPYAC DYEGCGAAFA MRSNLKNHKR THTGEKPYAC DNEGCGAAFT QSNHLTIHKR 180 SWHTQEGQAR QKKQEQRVSR ALDKAGIPYK REHQIDFRCV GDDAGFMARV DFVILLHGRV 240 IFLEVDEGQH KFGSYGSASC DMKRMSRILE SLAQGGNTLP LVFLRYNPNV FRVDGKVVKK 300 LKVTRESELV SLLENPASDV FLCDRPLVIQ YMYYDVAGCH AVVTRDPEYN VHIAQCCARS 360 IV

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MHTGEKPYAC DHEGCGATFA LSGDLTTHKR THTGDKPYAC DHPGCKASFT QSGHLKNHKR  60
THTGEKPYTC DHEGCGATFA LSGNLTNHKR THTGEKPYAC DHEGCGATFA MRGALTTHER  120
AHTGEKPYAC DYEGCGAAFA MRSNLKNHKR THTGEKPYAC DNEGCGAAFT QSNHLTIHKR  180
SWHTQEGQAR QKKQEQRVSR ALDKAGIPYK REHQIDFRCV GDDAGFMARV DFVILLHGRV  240
IFLEVDEGQH KFGSYGSASC DMKRMSRILE SLAQGGNTLP LVFLRYNPNV FRVDGKVVKK  300
LKVTRESELV SLLENPASDV FLCDRPLVIQ YMYYDVAGCH AVVTRDPEYN VHIAQCCARS  360
IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	7e-25	C2H2 family protein