PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH03018.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

Nin-like

Protein Properties

Length: 976aa MW: 97370.6 Da PI: 10.7169

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH03018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.3	1.7e-24	806	855	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++edl+++F l +k+AA++Lg+c+T+LKr+CR++GIkRWP+R+i++l PNH03018.1 806 RRLRFEDLQAQFGLGLKEAANNLGICATTLKRACRRHGIKRWPRRQIAKL 855 5799*******************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence
VALGRDAIPQ DRPARLHLYA AAVTAARTAQ AAARVRWSGL SAAALGAALA GAGLMPPLPL 60 PPGGGGRGGA AVPLTLDAAR LVTGGVQLLR LAEQAVGEMR THHAFRTHES FGLLESAIGR 120 LREAVEGSLQ GGKGKGGPGS WGGGVSDAGA GRPRDAAEED RRMAAGWEAV EALAGAVLAA 180 RDAFRGFEQS LAAVERDQAA RLAVERAMAS GGGEGGKALQ SPPGSASRPF NLRGRISRAT 240 PRRTLGPSGD EASDASPPAR NSATLSRNPS TRVPSGRPSF RPPSMGAATM WPRDLRAALA 300 TGRWSSDDEE EELGEEVGEG ALPPTLQLRG PASRRGLPPP LQLQQLRAAS GSGNGGGSGS 360 GGGGTRPPSS SRAGTARTGG IGNGDDAEGG GAGSGNDGGG AAAAARISRL EEKYGRLRSR 420 YDEAMRTLHV AWNTSGGGNG SGGGGGGGSS IGLPSPGVMA QLGPAARLRL VAELLAELHR 480 ECEQGVWPQL DAAVLGALVG RGWGRRSRTS TGTLGGQAAG HQAQQLSSSP PAVGAPVAGA 540 APGPAALAPI AAADGLEPGG GSGHSGQMKT ESSFGGGGGG LRAGSGGVNV NGGGGGGTTG 600 GTPSMDASNA QQLMSWLTQH GAGGNNALDQ LRVLLSQRQQ QTAQQAEQQG GPGSSPQHAA 660 APAAQPQPQH HHQQQQHMQQ QQMQQQQHAQ HMELQPQHPH HHQQQQHAAG IPIAAPPAAR 720 LSSSPASGPL DPASLAATLA GERAPSGHKL VRSGSMTRAQ GGSHAGGPEG EDGDGEDISD 780 GDSDDSDDEG GGGARNNNRV AGGAGRRLRF EDLQAQFGLG LKEAANNLGI CATTLKRACR 840 RHGIKRWPRR QIAKLSKALN QMGYSGGAAA GGGGGAAGGG AAAPVAPPKP KPAKKPDPVA 900 LQHATQLLFQ QHAAQAAAAQ HAAHAAAAAA AGGGVGGMFG GMGGGGGLMM GGMAQGLXPA 960 LPPALPQRPP ISSYHP

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence

VALGRDAIPQ DRPARLHLYA AAVTAARTAQ AAARVRWSGL SAAALGAALA GAGLMPPLPL  60
PPGGGGRGGA AVPLTLDAAR LVTGGVQLLR LAEQAVGEMR THHAFRTHES FGLLESAIGR  120
LREAVEGSLQ GGKGKGGPGS WGGGVSDAGA GRPRDAAEED RRMAAGWEAV EALAGAVLAA  180
RDAFRGFEQS LAAVERDQAA RLAVERAMAS GGGEGGKALQ SPPGSASRPF NLRGRISRAT  240
PRRTLGPSGD EASDASPPAR NSATLSRNPS TRVPSGRPSF RPPSMGAATM WPRDLRAALA  300
TGRWSSDDEE EELGEEVGEG ALPPTLQLRG PASRRGLPPP LQLQQLRAAS GSGNGGGSGS  360
GGGGTRPPSS SRAGTARTGG IGNGDDAEGG GAGSGNDGGG AAAAARISRL EEKYGRLRSR  420
YDEAMRTLHV AWNTSGGGNG SGGGGGGGSS IGLPSPGVMA QLGPAARLRL VAELLAELHR  480
ECEQGVWPQL DAAVLGALVG RGWGRRSRTS TGTLGGQAAG HQAQQLSSSP PAVGAPVAGA  540
APGPAALAPI AAADGLEPGG GSGHSGQMKT ESSFGGGGGG LRAGSGGVNV NGGGGGGTTG  600
GTPSMDASNA QQLMSWLTQH GAGGNNALDQ LRVLLSQRQQ QTAQQAEQQG GPGSSPQHAA  660
APAAQPQPQH HHQQQQHMQQ QQMQQQQHAQ HMELQPQHPH HHQQQQHAAG IPIAAPPAAR  720
LSSSPASGPL DPASLAATLA GERAPSGHKL VRSGSMTRAQ GGSHAGGPEG EDGDGEDISD  780
GDSDDSDDEG GGGARNNNRV AGGAGRRLRF EDLQAQFGLG LKEAANNLGI CATTLKRACR  840
RHGIKRWPRR QIAKLSKALN QMGYSGGAAA GGGGGAAGGG AAAPVAPPKP KPAKKPDPVA  900
LQHATQLLFQ QHAAQAAAAQ HAAHAAAAAA AGGGVGGMFG GMGGGGGLMM GGMAQGLXPA  960
LPPALPQRPP ISSYHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-12	Nin-like family protein