PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH03316.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family LSD
Protein Properties Length: 71aa    MW: 7236.22 Da    PI: 8.3818
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH03316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD123.49.9e-08117925
     zf-LSD1  9 sYPrGApsVRCalCdtV 25
                +YP GA++VRC+ C ++
  PNH03316.1  1 MYPQGASNVRCSRCSHI 17
                9*************997 PP
2zf-LSD145.89.7e-153357125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr+lLsYPrGA sV+C++C  V
  PNH03316.1 33 CNGCRVLLSYPRGAQSVQCSMCSSV 57
                **********************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MYPQGASNVR CSRCSHITSA PASAGADSAQ IVCNGCRVLL SYPRGAQSVQ CSMCSSVTQV  60
ANIAVGVKAD T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-14LSD family protein