PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH03716.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family SBP
Protein Properties Length: 138aa    MW: 15680.4 Da    PI: 8.8387
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH03716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.74.8e-2639114176
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                 +Cqv+gC+ +ls  k y +r+ vCe+h ka + +++g+e rfCqqC +f +l+ef+ ++rsC  r ++ n rrr +
  PNH03716.1  39 VCQVDGCNRELSGEKAYLQRYSVCEQHFKADASVLHGQEVRFCQQCNKFQDLREFEGARRSCAARSKDRNMRRRLQ 114
                 6************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MSADFPSGER GTRWRTADYD IDPYTGAVRS LGRASRAAVC QVDGCNRELS GEKAYLQRYS  60
VCEQHFKADA SVLHGQEVRF CQQCNKFQDL REFEGARRSC AARSKDRNMR RRLQTTGQQK  120
GNRAGDQEAT TLPLHFEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.13e-19SBP family protein