PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH04238.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family MYB
Protein Properties Length: 145aa    MW: 16245 Da    PI: 8.5052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH04238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-144695246
                     SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46
                     ++W +eE ++lv +v+ lG +      +W+ +ar++g gRt+kq+++++ +
       PNH04238.1 46 QPWFEEETQRLVALVASLGEEgnlcasDWSEVARRLG-GRTPKQVREKFKN 95
                     69******************9****************.**********986 PP
2Myb_DNA-binding28.43.7e-09104145144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      + +WT  E+  l+ a+ ++ ++ W+ +a++++ +R ++ +k+rw
       PNH04238.1 104 KEAWTMKEENVLALAHLRHRNR-WADVAQYLP-KRFENTIKNRW 145
                      579*******************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MSDTGDDDDT GSDASPLRIP TWPGGGGDAG AADAGTRKRG TSKQVQPWFE EETQRLVALV  60
ASLGEEGNLC ASDWSEVARR LGGRTPKQVR EKFKNDLRPG IQNKEAWTMK EENVLALAHL  120
RHRNRWADVA QYLPKRFENT IKNRW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.22e-21MYB family protein