PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH12387.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

Nin-like

Protein Properties

Length: 703aa MW: 72599.6 Da PI: 8.6388

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH12387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.5	2.4e-22	469	518	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+ ++l++ ++l+i++AA+eLg+++T LK CR +GI+RWP+Rk+ks+ PNH12387.1 469 ASITKDKLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSM 518 689*********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
ASVRDRLQSN STAQPTTQQD SKRQNGQLHT GMLPTVDVDR SGLYMGKREH PQQRSSGDGT 60 QEGCPDVKRL RGDSAGGNRP LDSALGTCPI LPSLAPMRSA FSQPLACLPA EWQPGCTVMT 120 GRRSTRSPAP KAGRSVSLMR AASADHCSSP FSRRGSGLAA VADGNDSSTV NVIANNGSTN 180 GDNSIGAPAS GPWGANVAPE SMGSADLRRL AQLAEAAAML EEQLAPGSRG AGRGAARGPA 240 SGPGPFATSG RGVAAMEASS AAHRSGADAA DHEPLPRQRT GPPPGAVPLG SGPAGSASAA 300 SGQGGSRDSA RPQLFVAASA PSGGLPLRPL ASLPMPMRMG ESQPAFGAAA LARARSSDVR 360 QASPDPRPDA GGLGSSYRDN QDSDAVSGGS EGNDRRHLNE DGDDDGGDGS GDSGAGGSSG 420 GGRSLTERYR AALKASAAEK RGRTPTGAGG KLDSDKQRAV RNGVCARIAS ITKDKLQQVY 480 HLNIEEAARE LGIGMTKLKE HCRTLGIPRW PSRKLKSMDK LIESLNERAS TEPATKEVIA 540 DILAEIESFK RAIYENPCLE VEEDIKRLRQ SNFKKEYQQR QVEQRNGRNG SVERLPGRPS 600 HSSGSGDGAA DDFPGAGGSA LPPALGAGLG PALSCDQGSA QLMQVQLAQM QAAQSSAEQL 660 PLHPAVWQHL AAIGGLPPQN LLMPSVLAQQ LQQQQLPVEG GAL

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

ASVRDRLQSN STAQPTTQQD SKRQNGQLHT GMLPTVDVDR SGLYMGKREH PQQRSSGDGT  60
QEGCPDVKRL RGDSAGGNRP LDSALGTCPI LPSLAPMRSA FSQPLACLPA EWQPGCTVMT  120
GRRSTRSPAP KAGRSVSLMR AASADHCSSP FSRRGSGLAA VADGNDSSTV NVIANNGSTN  180
GDNSIGAPAS GPWGANVAPE SMGSADLRRL AQLAEAAAML EEQLAPGSRG AGRGAARGPA  240
SGPGPFATSG RGVAAMEASS AAHRSGADAA DHEPLPRQRT GPPPGAVPLG SGPAGSASAA  300
SGQGGSRDSA RPQLFVAASA PSGGLPLRPL ASLPMPMRMG ESQPAFGAAA LARARSSDVR  360
QASPDPRPDA GGLGSSYRDN QDSDAVSGGS EGNDRRHLNE DGDDDGGDGS GDSGAGGSSG  420
GGRSLTERYR AALKASAAEK RGRTPTGAGG KLDSDKQRAV RNGVCARIAS ITKDKLQQVY  480
HLNIEEAARE LGIGMTKLKE HCRTLGIPRW PSRKLKSMDK LIESLNERAS TEPATKEVIA  540
DILAEIESFK RAIYENPCLE VEEDIKRLRQ SNFKKEYQQR QVEQRNGRNG SVERLPGRPS  600
HSSGSGDGAA DDFPGAGGSA LPPALGAGLG PALSCDQGSA QLMQVQLAQM QAAQSSAEQL  660
PLHPAVWQHL AAIGGLPPQN LLMPSVLAQQ LQQQQLPVEG GAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	238	RGAGRGAARG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	3e-20	Nin-like family protein