PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON31990.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 341aa    MW: 37884.8 Da    PI: 5.0722
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON31990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.42.9e-161655645
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 sn  v+fskRr g++ KA EL++ Cda++a++++s+tg+
  PON31990.1 16 ASNVFVSFSKRRRGLFQKAAELCTKCDAQIAIVVLSPTGN 55
                67889*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MAPKRSLATM EDGERASNVF VSFSKRRRGL FQKAAELCTK CDAQIAIVVL SPTGNPFSFG  60
HSSVDDVLRH YLTNTTMGPP NFITDEHRNQ TQRIEGLKFS LKQRKPQIND REARVVSQLK  120
GWVEKELEEP KTVAELEFLR AKLNNLLGKI TRRLAGSSST TCLGGAGGEI HQGFDSVFPK  180
TDFVQYANML QQHLNTVIPS SNLDLGFVDH PINDMSYAKY GTSSNIPLSA FFTCQNREFV  240
GNDNNNFQFH TSDSECLDHP LNHVDVSYAN EDANDDGTSS SGGDAGSHVD HGFTCQTNTD  300
FVATDDDILQ FTSSDLEFLR HILNDTSYAN FGFTSQDNDF V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-19M-type_MADS family protein