PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON32854.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25605.2 Da    PI: 9.8565
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON32854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.6e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  PON32854.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                79***********************************************95 PP
2K-box111.11.2e-36791736100
       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +s +e +a+++qqe+akL+++i++Lq+++Rhl+G++L+sLs+keL+qLe++Le+++++iRskK+e+ll+ ie+lqk+e +l++en +Lr+k+ e
  PON32854.1  79 ATSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLSVKELKQLENRLERGITRIRSKKHEMLLADIEYLQKREMDLENENICLRTKISE 173
                 4558899*************************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
NIRSTIERYK KACSDTSGAT SITEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDSLSSLS  120
VKELKQLENR LERGITRIRS KKHEMLLADI EYLQKREMDL ENENICLRTK ISEIERFHQA  180
NMVSGSEFTA IQALTSRNFF SPNLIEGGTS FSQQDKKILH LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-121MIKC_MADS family protein