PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON33157.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 218aa MW: 25390.4 Da PI: 8.6591

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON33157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+t a+ g++Rt+k+c++rw++yl PON33157.1 17 KGPWTMEEDLILINYIANHGEGVWNTLAKAAGLKRTGKSCRLRWLNYL 64 79********************************************97 PP
2	Myb_DNA-binding	52.8	9.2e-17	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++++ ++++++G++ W++Ia++++ gRt++++k++w++ PON33157.1 70 RGNITNEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 113 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MDHKKACNSS QELEVRKGPW TMEEDLILIN YIANHGEGVW NTLAKAAGLK RTGKSCRLRW 60 LNYLRPDVRR GNITNEEQLI IMELHAKWGN RWSKIAKHLP GRTDNEIKNY WRTRIQKHIK 120 QADHHHNHQI NVNHRQSSEM INDQGSTSSQ LSSGTADAME SYSPRLTSYQ GINYMDHHQT 180 NINNNYPMVL PPVATSNIDQ NYNWTMEDIW SMQLLNSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	2e-87	MYB family protein