PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON33920.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MIKC_MADS

Protein Properties

Length: 204aa MW: 23208.9 Da PI: 9.2969

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON33920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.9	1.5e-24	10	56	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs++gkly+ PON33920.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSTHGKLYD 56 8********************************************97 PP
2	K-box	40	1.7e-14	77	168	8	99
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s +++a++++ q ++L ++ e + + + G + ++++l eLq Le++Le + +iRs+K +++ ++i+ l+ ke l+ +nk+L+ k+e PON33920.1 77 SlQAQADQQQAIQTKSQLDANEEIIMLK-QYMFGGGAGTMTLDELQVLEKNLELWIYQIRSTKLDIMSREIQLLRDKEGILKAANKYLQDKIE 168 3355555666666666666655555554.7899*********************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MARGKIQLRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFST HGKLYDLATK 60 GTMQGLIERY MKSTRGSLQA QADQQQAIQT KSQLDANEEI IMLKQYMFGG GAGTMTLDEL 120 QVLEKNLELW IYQIRSTKLD IMSREIQLLR DKEGILKAAN KYLQDKIEVN STAITDLDFA 180 PMITNNIPYP LTVIQNEIYF SSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	6e-73	MIKC_MADS family protein