PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON34591.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

LBD

Protein Properties

Length: 359aa MW: 39530.4 Da PI: 6.4172

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON34591.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.8e-43	11	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++Cv+apyfp ++p+kf nvhk+FGasnv+kll++l+ e+reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+q++++l+ +k+ PON34591.1 11 PCAACKIQRRKCTQECVFAPYFPPDNPQKFSNVHKVFGASNVSKLLNELKAEHREDAVNSLAYEADARLRDPVYGCVGLISILQHRLKQVQTDLVNAKQ 109 7**********************************************************************************************9998 PP DUF260 100 el 101 el PON34591.1 110 EL 111 75 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MSSSSSISNS PCAACKIQRR KCTQECVFAP YFPPDNPQKF SNVHKVFGAS NVSKLLNELK 60 AEHREDAVNS LAYEADARLR DPVYGCVGLI SILQHRLKQV QTDLVNAKQE LATYIGPQAM 120 FPIFQTSPFM PQGIPSPSTS TVYPYNTVPP MMSGFQTGPP PRNRGQLVIR EPQAQAQPPQ 180 VQAPAPQSHL QIFEAQQVAS AISARDSQQE FLMRGGGLDQ KMVFQQQLQQ YQPPLGYIAQ 240 PVNPQSMGRF ETGFDPRVGP PDHETAAGFI GQMGSGVSPM EPTLGLGSGF DNNAYNQVQP 300 VQAESDQQQH QHHSSLNQLH DEQVMFETPQ SPLLQLGPQP QLWNKLEGGE DRRVGPPSF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MSSSSSISNS PCAACKIQRR KCTQECVFAP YFPPDNPQKF SNVHKVFGAS NVSKLLNELK  60
AEHREDAVNS LAYEADARLR DPVYGCVGLI SILQHRLKQV QTDLVNAKQE LATYIGPQAM  120
FPIFQTSPFM PQGIPSPSTS TVYPYNTVPP MMSGFQTGPP PRNRGQLVIR EPQAQAQPPQ  180
VQAPAPQSHL QIFEAQQVAS AISARDSQQE FLMRGGGLDQ KMVFQQQLQQ YQPPLGYIAQ  240
PVNPQSMGRF ETGFDPRVGP PDHETAAGFI GQMGSGVSPM EPTLGLGSGF DNNAYNQVQP  300
VQAESDQQQH QHHSSLNQLH DEQVMFETPQ SPLLQLGPQP QLWNKLEGGE DRRVGPPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-66	LBD family protein