PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON34883.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family Whirly
Protein Properties Length: 235aa    MW: 25751.7 Da    PI: 10.1081
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON34883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly187.22.8e-58611962137
      Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100
                 v+k+kaal+v +++ptf++ldsg  +++r+G ++l++++a++erkydWekkq fals+tev++l++l+  +sceffhdp++ +sn+G+vrk+l+++P++
  PON34883.1  61 VFKGKAALSVTPILPTFTKLDSGLHVVERRGVMMLKFIPAIGERKYDWEKKQLFALSPTEVGSLISLGVSDSCEFFHDPSMLSSNAGQVRKSLSIKPHS 159
                 9************************************************************************************************** PP

      Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  GsG++++l+v n++ k+ +++svP + aefav++++
  PON34883.1 160 TGSGYMISLTVINNVEKTRDNLSVPFTTAEFAVVKTA 196
                 **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MTMKLSRLLA SSRNHLSKNI LCGKDGNLSH GLPLHTFTSR AGISTAEQNL GVKGIAAPYT  60
VFKGKAALSV TPILPTFTKL DSGLHVVERR GVMMLKFIPA IGERKYDWEK KQLFALSPTE  120
VGSLISLGVS DSCEFFHDPS MLSSNAGQVR KSLSIKPHST GSGYMISLTV INNVEKTRDN  180
LSVPFTTAEF AVVKTACSYA LPHILGWDRL TDKVARGHAS NFKVDRQLMD SEWDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-86Whirly family protein