PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON35135.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family C3H
Protein Properties Length: 230aa    MW: 26027.8 Da    PI: 9.0363
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON35135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.4e-064464526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                +C +f + G+C+ Gd+C +aHg
  PON35135.1 44 PCIHFKA-GFCPQGDSCACAHG 64
                7998888.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MMYVYKIKPC KRTVCNFPFN PCPFLHEREA GRRDLMWHKY SCIPCIHFKA GFCPQGDSCA  60
CAHGIPEQRF HPMLFRTKFC WYMNSCKRKD CSYAHKEQEK RVPTIAPQVA GPRARSTSPS  120
DIFTNISSAL MNPAIFNSSQ SLPKIPSGIK RNFISLHSEN GDRPSYTSAK PELTDLSMNS  180
NLQRSLSSQP DFSWVHVLVE DDDDKPRLNG GSKLEKGAQM EGKSGGINFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.13e-24C3H family protein