PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON35158.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 406aa MW: 46239 Da PI: 4.3388

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON35158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	173	255	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a e+ + ++++l+ W+ev++k++e ++ r+ +qC+++++ l+k+ykk+k ++ ++ +s+++yf++++ PON35158.1 173 WTERETFVLLDAWGERFLQRGKKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKLNSTSG---GTSKWVYFKKID 255 ***********************************762678******************999986...6779***986 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDDTEDDARY PPNAYGGNHH QGYGSSHRQK LPGQDGPYTR PVGGSYVDED DEEEDEDEDE 60 ELGEEEDDNN NNNNNNGQNN GYPPVRKHGS GDDDDDDEDD DMDEVAEDED LDKRKDYGRK 120 SDDVDLERHP KKRKLKSLVS SYEFAPRVPP APSAATPSAP RLSFGGRNSL TDWTERETFV 180 LLDAWGERFL QRGKKSLRSE EWQEVAEKVS EVSKIDRTDT QCRNRLDTLK KKYKKEKLNS 240 TSGGTSKWVY FKKIDLLLSS PNQQSGLSCG MDSGEYVFMN PRLYLNCANG LDEMRDSPVN 300 SLSEEGEDSD GLPPKKRKSG RDKDDDEGSS SFRLLADTIQ KFGEIYEKIE DSKRQQMVEL 360 EKMRMDFQRD LELQRRQIME RAQAEIAKIR QGDDDEIDVS AENASG

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDDTEDDARY PPNAYGGNHH QGYGSSHRQK LPGQDGPYTR PVGGSYVDED DEEEDEDEDE  60
ELGEEEDDNN NNNNNNGQNN GYPPVRKHGS GDDDDDDEDD DMDEVAEDED LDKRKDYGRK  120
SDDVDLERHP KKRKLKSLVS SYEFAPRVPP APSAATPSAP RLSFGGRNSL TDWTERETFV  180
LLDAWGERFL QRGKKSLRSE EWQEVAEKVS EVSKIDRTDT QCRNRLDTLK KKYKKEKLNS  240
TSGGTSKWVY FKKIDLLLSS PNQQSGLSCG MDSGEYVFMN PRLYLNCANG LDEMRDSPVN  300
SLSEEGEDSD GLPPKKRKSG RDKDDDEGSS SFRLLADTIQ KFGEIYEKIE DSKRQQMVEL  360
EKMRMDFQRD LELQRRQIME RAQAEIAKIR QGDDDEIDVS AENASG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	134	KRKDYGRKSDDVDLERHPKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-67	Trihelix family protein