PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON35604.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 410aa MW: 45301.9 Da PI: 9.456

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON35604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g+W++ ++ g+ R++k+c++rw +yl PON35604.1 14 KGAWTKEEDQRLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.8	6e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ PON35604.1 67 RGNFTEEEDELIINLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGRSPCCEKE HTNKGAWTKE EDQRLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLL LIPTTNTTTS TPPPKTSTTT STPPPKTSTT STSPPPTTTI TSTTAVAATS 180 SSSSDNQNIK LTMLMGKGNN NNNNMNIMMI NKSNANAKLN NHPHDDRVLI ESNNSTSSAT 240 SDHSNMSSST LTSSSEQLVF SQTVQGGLNL DLSIGLLPFG PTTSTTSIKL QPQPQIQQQK 300 QQIIHKQHDH YYFTYDHDDN NRKLFYGRIK NSTNIAQSCT ENPSVLPAAA AALSTSTSIA 360 NSSVCLCCRL GLQKNQPCRC NSMPTSTLVT PAAAALPTHN YIYTYYTTTT

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGRSPCCEKE HTNKGAWTKE EDQRLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHRPLL LIPTTNTTTS TPPPKTSTTT STPPPKTSTT STSPPPTTTI TSTTAVAATS  180
SSSSDNQNIK LTMLMGKGNN NNNNMNIMMI NKSNANAKLN NHPHDDRVLI ESNNSTSSAT  240
SDHSNMSSST LTSSSEQLVF SQTVQGGLNL DLSIGLLPFG PTTSTTSIKL QPQPQIQQQK  300
QQIIHKQHDH YYFTYDHDDN NRKLFYGRIK NSTNIAQSCT ENPSVLPAAA AALSTSTSIA  360
NSSVCLCCRL GLQKNQPCRC NSMPTSTLVT PAAAALPTHN YIYTYYTTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	9e-84	MYB family protein