PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON35870.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 378aa MW: 42125.6 Da PI: 6.3996

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON35870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl PON35870.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.9	8.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ PON35870.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 STSLNSTTTN SITTPSNITD HHHHHHLQIC YNSTQILDNF QTQSDITSTK PNTTAHDQAQ 180 LFSTSSCGPL FMFDTTSPIE GAAESTTPTT TATTTNTTNV TRSELIFQDI NLSVGNNLNS 240 SSETTSSLSS SAWNLNQHQV QALPPYNNIN IHNNSNSNAL LLPNTSSFSS NGTAVNVSYL 300 PPLIESMENM VDEEGEMALN YEWVESQQHC PNFLFWENVV VEGSLINGEM NINGPANDNG 360 LNLGASNTNT MSSFPTSL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
STSLNSTTTN SITTPSNITD HHHHHHLQIC YNSTQILDNF QTQSDITSTK PNTTAHDQAQ  180
LFSTSSCGPL FMFDTTSPIE GAAESTTPTT TATTTNTTNV TRSELIFQDI NLSVGNNLNS  240
SSETTSSLSS SAWNLNQHQV QALPPYNNIN IHNNSNSNAL LLPNTSSFSS NGTAVNVSYL  300
PPLIESMENM VDEEGEMALN YEWVESQQHC PNFLFWENVV VEGSLINGEM NINGPANDNG  360
LNLGASNTNT MSSFPTSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	8e-86	MYB family protein