PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON36001.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 239aa MW: 25928.4 Da PI: 8.9808

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON36001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.5e-42	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++ PON36001.1 46 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRA 144 7***********************************************************************************************998 PP DUF260 100 e 100 e PON36001.1 145 E 145 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MSRERERFDE IGKKIKRESS TTDAASGQMG RRHMLGPPGT LNTITPCAAC KLLRRRCAQE 60 CPFSPYFSPH EPHKFASVHK VFGASNVSKM LMEVPESQRA DAANSLVYEA NVRLRDPVYG 120 CMGAISALQQ QVQSLQAELN AVRAEILKYK FREANNIISP SSHHHHLALL SSNSGAVSVA 180 APPPAPPPPP PPPSTVQSLP LPSTITTTSS SSSMYTQPIT NSTIADYNTI SSENVPFFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-85	LBD family protein