PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON36065.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LSD
Protein Properties Length: 156aa    MW: 16815.2 Da    PI: 7.9345
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON36065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.56.1e-106791125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                Cg+C+ lL YP+GA+ V+ ++C+tV
  PON36065.1 67 CGSCHRLLKYPPGARQVQRSCCQTV 91
                ************************9 PP
2zf-LSD144.42.7e-14105129125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+C +lL+YP+GA+ VRC++C++V
  PON36065.1 105 CGSCTVLLMYPYGASQVRCSSCQHV 129
                 ************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MESKQVEEDD GPPPGYQSIL PSPQPPSSPL KLPPEPPPPT APPPQPPPTT LTPTTKTTPS  60
ETAQMVCGSC HRLLKYPPGA RQVQRSCCQT VNFVLEAHQV GQVKCGSCTV LLMYPYGASQ  120
VRCSSCQHVT EIGAHNRRPP WSVQQGQPLP GPNPCY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-36LSD family protein