PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON36262.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 403aa MW: 45367.4 Da PI: 6.8867

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON36262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	2e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ PON36262.1 34 ICTFYQK-GLCAYGSRCRYQHV 54 7****.***********7 PP
2	zf-CCCH	18.4	3.8e-06	143	164	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ Hg PON36262.1 143 PICS-FAAAGDCPRGEKCPHVHG 164 6788.*************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MPKRVFCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GLCAYGSRCR YQHVKAERAQ 60 SSASSSSIIS QQFVVSDSIS LPHSSSTSSK GIAFIPGAVS ELSALSRPFV LPKPPAWKQE 120 YEQSDFLDGG DVGETSVTPA DLPICSFAAA GDCPRGEKCP HVHGDLCPTC GKHCLHPFRP 180 DEKEEHLRTC NKKHKHLEAL KHSQEIECSV CLERVLLKPT AAERKFGLMS ECDHPFCISC 240 IRNWRSSSPT SGFDVNSALR ACPICRKLSY FVVPSVVWYT SKEEKQEIVN SYMAKLKSID 300 CKHFDFGNGN CPFGTSCFYR HTVKPGSYVW KHHRPPPRRP TPRRSNVVEM DALLDMFEHL 360 EGMECYSPED LDSEDTNTWE MGLLFSLMGF DTSDSSSDEE FIF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MPKRVFCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GLCAYGSRCR YQHVKAERAQ  60
SSASSSSIIS QQFVVSDSIS LPHSSSTSSK GIAFIPGAVS ELSALSRPFV LPKPPAWKQE  120
YEQSDFLDGG DVGETSVTPA DLPICSFAAA GDCPRGEKCP HVHGDLCPTC GKHCLHPFRP  180
DEKEEHLRTC NKKHKHLEAL KHSQEIECSV CLERVLLKPT AAERKFGLMS ECDHPFCISC  240
IRNWRSSSPT SGFDVNSALR ACPICRKLSY FVVPSVVWYT SKEEKQEIVN SYMAKLKSID  300
CKHFDFGNGN CPFGTSCFYR HTVKPGSYVW KHHRPPPRRP TPRRSNVVEM DALLDMFEHL  360
EGMECYSPED LDSEDTNTWE MGLLFSLMGF DTSDSSSDEE FIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-137	C3H family protein