PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON36265.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 392aa MW: 44281.1 Da PI: 7.666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON36265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	219	238	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k F+r nL+ H+ PON36265.1 219 FHCPLCFKFFNRYNNLQMHM 238 78*****************9 PP
2	zf-C2H2	15.2	6.2e-05	303	325	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F k + ++H +++ PON36265.1 303 FRCRKCDKPFAVKGDWRTHEKNC 325 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MTNPHSNLFN GWINFISLHP HCYSPTPNYN SSNTTTTTTT NNNNIHCFNN SNLLPCCANY 60 SNNQQLISRK YQLPYYGFSS DNNNINVLSS SLPSKEALPL IDKLKPLGNT QDHHQQQQLL 120 SSNTKTGDQA GSDHHNKNDD DDDDCDEKTR VTVALHIGLP SPNSDEAGVG SGVMADIKEL 180 RGVTSSDHAV CSWDRQGGGT SHPYWIPTPS QILVGSTQFH CPLCFKFFNR YNNLQMHMWG 240 HGSQYRKGPE SLKGSQPTAM MRVPCYCCWP GCKHNISHPR AKPLKDFRTL QTHYKRKHGS 300 KPFRCRKCDK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHVKAF GRGHAAFDDH 360 LQCLDDDDDN DDDELASQIE QDASYSPPSY DK

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MTNPHSNLFN GWINFISLHP HCYSPTPNYN SSNTTTTTTT NNNNIHCFNN SNLLPCCANY  60
SNNQQLISRK YQLPYYGFSS DNNNINVLSS SLPSKEALPL IDKLKPLGNT QDHHQQQQLL  120
SSNTKTGDQA GSDHHNKNDD DDDDCDEKTR VTVALHIGLP SPNSDEAGVG SGVMADIKEL  180
RGVTSSDHAV CSWDRQGGGT SHPYWIPTPS QILVGSTQFH CPLCFKFFNR YNNLQMHMWG  240
HGSQYRKGPE SLKGSQPTAM MRVPCYCCWP GCKHNISHPR AKPLKDFRTL QTHYKRKHGS  300
KPFRCRKCDK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHVKAF GRGHAAFDDH  360
LQCLDDDDDN DDDELASQIE QDASYSPPSY DK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	1e-103	C2H2 family protein