PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON38790.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26115.7 Da    PI: 8.0736
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON38790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g+lKKA+ELSvLCda+v +iifsstgkl+ey+s
  PON38790.1  9 KKIDNATARQVTFSKRRRGLLKKAHELSVLCDADVGLIIFSSTGKLFEYAS 59
                68***********************************************86 PP
2K-box51.25.3e-18911721899
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ++++++L kei +  +++R+l Ge+L+ L+++eLqqLe+ Le +l+++ +kK e ++++i +lq+k  +l een++Lr+++ 
  PON38790.1  91 NNNYSRLCKEIAEKSHQLRQLRGEELQGLNIEELQQLEKSLEAGLNRVMEKKGEKIMKEIGDLQRKGMKLMEENERLRQQVV 172
                 67899999***9999****************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAHELSVLCD ADVGLIIFSS TGKLFEYAST  60
SMKEILERHH LHSKNLEKLE QPSLKLQLVE NNNYSRLCKE IAEKSHQLRQ LRGEELQGLN  120
IEELQQLEKS LEAGLNRVME KKGEKIMKEI GDLQRKGMKL MEENERLRQQ VVEVSGGRTR  180
QVVTDSEYVI TEEGQSSESV TNVCNSNGPP QDYDSTTSDT SLKLGLPYAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-105MIKC_MADS family protein