PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON39106.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21667.7 Da    PI: 6.5195
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON39106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF848.9e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+k  rqvtfskRr g++KKA+ELSvLCd+e+ +++fs +++lye+s+
  PON39106.1  9 KRIEDKHSRQVTFSKRRSGLMKKAHELSVLCDVEIGLMVFSAHDRLYEFST 59
                79***********************************************96 PP
2K-box485.5e-1772164399
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++++  ++ k +++++e++ L ++ ++L+    +l   ++e+L+ keL +Le+qL++ lk iR +K+el++e + +l +kek+l+een+ L++k+ 
  PON39106.1  72 AHDNEGESSDKLKTYDTEYDGLWANDDMLKVM-SNL---KIEELTTKELAHLERQLDSILKPIRLRKTELMMETMTTLSEKEKQLREENQFLENKVT 164
                 55566678888999999999999988888865.566...589999************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MGRRKVDMKR IEDKHSRQVT FSKRRSGLMK KAHELSVLCD VEIGLMVFSA HDRLYEFSTG  60
DGLGKILQHY EAHDNEGESS DKLKTYDTEY DGLWANDDML KVMSNLKIEE LTTKELAHLE  120
RQLDSILKPI RLRKTELMME TMTTLSEKEK QLREENQFLE NKVTAIVGDR GKQVQLSEVN  180
DHAAHSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.19e-35MIKC_MADS family protein