PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON39295.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 442aa MW: 47690.5 Da PI: 8.1232

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON39295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG +C+F+H+ PON39295.1 48 PGEPDCIFYLRTGLCGYGTNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	38.5	1.9e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ PON39295.1 92 QPDCGYFLKTGTCKYGSTCKFHHPR 116 789********************96 PP
3	zf-CCCH	34	5e-11	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++ rtG Ck+G+ CkF+H++ PON39295.1 139 SCPYYVRTGACKFGPACKFHHPQ 161 6********************97 PP
4	zf-CCCH	37.7	3.5e-12	285	310	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ PON39295.1 285 DQPECRYFMNTGTCKYGTECKYHHPK 310 689*********************96 PP
5	zf-CCCH	34.8	2.8e-11	332	355	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++ +G CkyG++CkF H+p PON39295.1 332 AVCSYYSMYGLCKYGPTCKFDHPP 355 78********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MPDTRQPVKN AGPNQSDGNI EEAIWRLKIN DNQEGGGVAQ TNPFPDRPGE PDCIFYLRTG 60 LCGYGTNCRF NHPAYAPQVA QYNGELPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG 120 AGPVSFNVLG LPMRQEEKSC PYYVRTGACK FGPACKFHHP QPASFGTGFL GGPPPAFGSA 180 GSAVLPSSNL PYAGGLQAWS LPRVPYPLSG PQPQPQPYMP VIVSPSQGII PAGVWNTYVG 240 NISPVSPAGI LGSSLVYNPR NPGESCSAGQ VNLSNSTPNL PDRPDQPECR YFMNTGTCKY 300 GTECKYHHPK ERMAQAAPIA NQIGLPSRPG LAVCSYYSMY GLCKYGPTCK FDHPPMQNLY 360 NYGLSLPAML DSPYLYYTKG SSTPHVPETS HSLASKSFDV VPKPLSNKNH NSDSRLSDDS 420 VKQASSLAHS SPSSEASEDQ SG

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MPDTRQPVKN AGPNQSDGNI EEAIWRLKIN DNQEGGGVAQ TNPFPDRPGE PDCIFYLRTG  60
LCGYGTNCRF NHPAYAPQVA QYNGELPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG  120
AGPVSFNVLG LPMRQEEKSC PYYVRTGACK FGPACKFHHP QPASFGTGFL GGPPPAFGSA  180
GSAVLPSSNL PYAGGLQAWS LPRVPYPLSG PQPQPQPYMP VIVSPSQGII PAGVWNTYVG  240
NISPVSPAGI LGSSLVYNPR NPGESCSAGQ VNLSNSTPNL PDRPDQPECR YFMNTGTCKY  300
GTECKYHHPK ERMAQAAPIA NQIGLPSRPG LAVCSYYSMY GLCKYGPTCK FDHPPMQNLY  360
NYGLSLPAML DSPYLYYTKG SSTPHVPETS HSLASKSFDV VPKPLSNKNH NSDSRLSDDS  420
VKQASSLAHS SPSSEASEDQ SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-112	C3H family protein