PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON39940.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20314.3 Da    PI: 10.2017
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON39940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF657.8e-211155347
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                ++ +s rqvtfskRr+g++KKA+EL +LC+aev v++fs+ gk +
  PON39940.1 11 VKGSSCRQVTFSKRRTGLFKKANELATLCGAEVGVVVFSPGGKPF 55
                567899**********************************99855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MGRRKIEMKM VKGSSCRQVT FSKRRTGLFK KANELATLCG AEVGVVVFSP GGKPFSFGQP  60
NVESIADRFL NQEPKTTTTT ASSSSSRKKN NKTMEKLNQQ LNDCVKQLHE EKLRGEALDK  120
GIAEAKGLFF ANNSTEELGA TELAKLKAGM EELRERVKER VGEMEASSIL LMLSNNVVGP  180
PEKSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-42M-type_MADS family protein