PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON39943.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 210aa    MW: 24208.4 Da    PI: 9.8039
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON39943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.7e-162775149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i ++  r +tfskR+ gi KKA+EL +LC+ ev  i fs++gk + y
  PON39943.1 27 KMIRDENDRLTTFSKRKSGIYKKANELVTLCGGEVGFITFSPSGKPFSY 75
                57899999************************************96665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MEANPTTNHN QKPNKKQTKG KQKIEMKMIR DENDRLTTFS KRKSGIYKKA NELVTLCGGE  60
VGFITFSPSG KPFSYGNPSI DSVIAERLLL DQTTKLTMTD VTTHPIMEVH REMRINNLNQ  120
KYNNLYSHME VEKERQQSLQ KMPTEAPDEL WEGSIEGLSL EELKQRQRFL EELHANISNH  180
VKERMSRSWN IFNNKNNNIS TPAATPRSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-24M-type_MADS family protein