PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON39947.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24594.9 Da    PI: 9.9118
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON39947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.7e-173381149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++  r +tfskRr gi KKA+EL +LC+ e+ ++ifs++gk + y
  PON39947.1 33 KMIQDDDDRLITFSKRRSGIYKKASELVTLCGGEIGLVIFSPSGKPFSY 81
                6799999*************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MEANTTATTY NKSNHKQKHN KKQTKGKQKI EMKMIQDDDD RLITFSKRRS GIYKKASELV  60
TLCGGEIGLV IFSPSGKPFS YGHPSVDVVA KRLLLDQATG AATSDAAAHP IVEAHRRLRI  120
NNLNQQYNDL FGHLETEKEK QKELLKMPAP DELWAAPIEG LSLDELNERQ RCLEELHATI  180
SNHVKERLTR SLNSFNNKDK NVSTPATAPS SSSLFSKRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-32M-type_MADS family protein