PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON40008.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YA
Protein Properties Length: 332aa    MW: 36486.2 Da    PI: 9.8208
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON40008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.66.7e-31159216158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++I++RRq+Rak++  e+k+  k rkpy+heSRh hA+rRpRg+gGrF
  PON40008.1 159 DGPIYVNAKQYHGIIRRRQSRAKAAVlENKI-PKVRKPYMHESRHLHAMRRPRGCGGRF 216
                 57**********************9879999.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MAMQTIYFKE HEGLVPNTIG QLSSIPSGPW WSAFGTQSVF GDSCGQLKPL SMEQPGTGDQ  60
LISTKHAGRG TDLGPDKGNT TQFTIFPGDY KFSGDGQKTQ ATISLQSSLP EYRARLELGF  120
GQPMVCAKYP YIDQFCGLLS YGHQISGRIM LPLNLTADDG PIYVNAKQYH GIIRRRQSRA  180
KAAVLENKIP KVRKPYMHES RHLHAMRRPR GCGGRFLNTK NLNNDKGGGP EVKKLGNGHQ  240
LFRPSRSQSS EVLQSESGTL NSSKEANNSS GSNISGSEVT SMYSRGDLDH FQINPLASSF  300
HSLSDMMENS RGMVMPTKWI AAADHSRCNI KV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-64NF-YA family protein