PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON40747.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YA
Protein Properties Length: 319aa    MW: 35052.9 Da    PI: 9.123
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON40747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.7e-32156212158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rakle ekk  +k rkpylheSRh+hA+rR+Rg+gGrF
  PON40747.1 156 EEPVYVNAKQYHGILRRRQSRAKLELEKKA-IKVRKPYLHESRHQHAMRRARGCGGRF 212
                 69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MPAKAEHEDR RPQHRADNVF QAGVYAQPWW REMATNAAIG ESPSKSSFVE NASRRLDDGA  60
NFQKEISATI AQSDGTNGSE HRVKTVPSST ALTVGEHLDP NSQMELVGHS IVLTPYPYAD  120
PNYGGVLTPY GPQAMVPPQL YGMYPGRMAL PLEMEEEPVY VNAKQYHGIL RRRQSRAKLE  180
LEKKAIKVRK PYLHESRHQH AMRRARGCGG RFLNTKKLDD NVASSTSEKA TTSDGNQSTQ  240
STSGWNVDSS GNQKEGPGST DEDTGKMQTL SNENGKSNGH GLSSTFDLRF SDSKEGDYMG  300
RGRKGMMLNG STHGAIPIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.26e-48NF-YA family protein