PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON40779.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 546aa MW: 61252.5 Da PI: 7.6358

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON40779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	84	104	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F + L H+r H PON40779.1 84 CRVCGKGFDSLRALFGHMRHH 104 9******************99 PP
2	zf-C2H2	16.9	1.8e-05	114	134	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + L+ H++tH PON40779.1 114 CKECGKEFASLRALTGHMKTH 134 ********************9 PP
3	zf-C2H2	12	0.00063	380	402	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k F+++ L H+ +H PON40779.1 380 YKCRTCNKIFNSHQALGGHQTVH 402 9***************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MEQDQEQRHV CRFCNKSFLN GKVLGGHMRC HVAKNSTKSE RNLNQSNPDI EGGERVGYGL 60 RVNPKKSCKF SGSTQEASGQ EILCRVCGKG FDSLRALFGH MRHHSGKRRK LVLCKECGKE 120 FASLRALTGH MKTHSERFRV SIESSDVPSE KLFGDNHYSG GGTSGLVRKK RSRRLRYSNK 180 ITPNSSFSTL SESSYGVECD HEVEEVAICL LMLSRGVRNW DGFSSFTESS DNNSSEVKSP 240 NRSKRILDND GDGCLRMKKS RLEKSELCVL DSNNSFFGDK KVSEFSENDF GSENDEEKSA 300 KLDDRSAVAL ADTETEKVSD DKMKINSIET ESDDYQRVEV GEDLAAGFRS LKVSLSEKTR 360 FDYSNSGSQI LYTYHKKSGY KCRTCNKIFN SHQALGGHQT VHRTPKKCST FLNDDPQIVD 420 HSDDFPGTEA NIKSSKTEYG EISVEQEMDR GTMTSNEIKE HKCPICFKIF ASGQALGGHK 480 RAHLVKDSEI APEQQITLLK HSVCNVCDVL DVPMTLGNEA NTEVDLKSWW IKNDHKHEFL 540 VGLIPN

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MEQDQEQRHV CRFCNKSFLN GKVLGGHMRC HVAKNSTKSE RNLNQSNPDI EGGERVGYGL  60
RVNPKKSCKF SGSTQEASGQ EILCRVCGKG FDSLRALFGH MRHHSGKRRK LVLCKECGKE  120
FASLRALTGH MKTHSERFRV SIESSDVPSE KLFGDNHYSG GGTSGLVRKK RSRRLRYSNK  180
ITPNSSFSTL SESSYGVECD HEVEEVAICL LMLSRGVRNW DGFSSFTESS DNNSSEVKSP  240
NRSKRILDND GDGCLRMKKS RLEKSELCVL DSNNSFFGDK KVSEFSENDF GSENDEEKSA  300
KLDDRSAVAL ADTETEKVSD DKMKINSIET ESDDYQRVEV GEDLAAGFRS LKVSLSEKTR  360
FDYSNSGSQI LYTYHKKSGY KCRTCNKIFN SHQALGGHQT VHRTPKKCST FLNDDPQIVD  420
HSDDFPGTEA NIKSSKTEYG EISVEQEMDR GTMTSNEIKE HKCPICFKIF ASGQALGGHK  480
RAHLVKDSEI APEQQITLLK HSVCNVCDVL DVPMTLGNEA NTEVDLKSWW IKNDHKHEFL  540
VGLIPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-20	C2H2 family protein