PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON41214.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 26093.9 Da PI: 10.2467

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON41214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.2	5.1e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gkl e++s PON41214.1 10 RIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLNEFAS 59 8***********************************************86 PP
2	K-box	86.6	4.9e-29	76	171	3	98
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +++ e ++++l+qe+a + +ie L+ ++R++lGe+L+s+sl+eLqq+eqqL+ks++kiR++Kn++++eqie+l++kek l +en +L++k+ PON41214.1 76 NQANNKSVEPNMQHLKQEAAAMMTKIELLEISKRKFLGEGLGSCSLEELQQVEQQLQKSVSKIRARKNQVFREQIEQLKEKEKVLISENARLSEKY 171 45566689999*********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MVRGKTQMRR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLNEFASS 60 SMQATVERYR RHTKDNQANN KSVEPNMQHL KQEAAAMMTK IELLEISKRK FLGEGLGSCS 120 LEELQQVEQQ LQKSVSKIRA RKNQVFREQI EQLKEKEKVL ISENARLSEK YGIKPIQALN 180 NQTENLDNTE SNPSSDVETE LFIGLPETRL KRLPSKNCRD ETHIKHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-83	MIKC_MADS family protein