PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON41236.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 205aa MW: 23572.6 Da PI: 9.236

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON41236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd++l+++++ +G+ Wk+ a + g+ R++k+c++rw +yl PON41236.1 18 RGTWTLEEDQKLAQVIEIHGPTKWKSLAVKAGLSRCGKSCRLRWMNYL 65 89********************************************97 PP
2	Myb_DNA-binding	50.7	4.1e-16	71	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l PON41236.1 71 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 116 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MSTATSSSTQ RAKKETNRGT WTLEEDQKLA QVIEIHGPTK WKSLAVKAGL SRCGKSCRLR 60 WMNYLRPNIK RGNISDQEED LILRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNSHLSKKI 120 KQIERPNRST TLTALESHLP EMNTKVKEAD NECPKQITTE STNPKGSNHE NPMSGFLGEE 180 HLNLEWSNFL EVDESWFCFA GNYNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	8e-55	MYB family protein