PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON41274.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C2H2
Protein Properties Length: 240aa    MW: 25473.1 Da    PI: 7.8767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON41274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000346991123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C + F ++  L  H++ H
  PON41274.1 69 YECQYCFREFANSQALGGHQNAH 91
                99******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MTATGAAAAV PPLKLFGFSI SDDNDGVDHQ LDQTSKSPPG STTQNNDDRS DDGVTTLKPA  60
NDVVGHHKYE CQYCFREFAN SQALGGHQNA HKKERQLMKR AQMQATSSTT ANTTARNYAL  120
ANISHVSGFM SPHLMGLAAA HQSSSWYYMA PQYAPALHMS SHGGGGGSTS AAYRHLSRTN  180
SMPGRRVYHG EATAFGALSD GVLYDNSQVF HGGTSTSNIS RHLDKGLGLD LHLGLGPAGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-14C2H2 family protein